Supporting information for "BioDynaMo: an agent-based simulation platform for scalable computational biology research"

Agents in bioinformatics, computational and systems biology

MERELLI, Emanuela
ARMANO G
CANNATA, Nicola
CORRADINI, Flavio
D'INVERNO M
DOMS A
LORD P
MARTIN A
MILANESI L
MOLLER S
SCHROEDER M
LUCK M.

January 2007

The adoption of agent technologies and multi-agent systems constitutes an emerging area in bioinform...

Supporting information for "High-Performance Agent-Based Simulation"

Anonymous

April 2022

This repository contains all supporting material for the paper "High-Performance Agent-Based Simulat...

BioSimGrid: towards a worldwide repository for biomolecular simulations

Tai, Kaihsu
Murdock, Stuart
Wu, Bing
Ng, Muan Hong
Johnston, Steven
Fangohr, Hans
Cox, Simon J.
Jeffreys, Paul
Essex, Jonathan W.
Sansom, Mark S. P.

January 2004

BioSimGrid is a database for biomolecular simulations, or, a `Protein Data Bank extended in time' fo...

Supporting information for "BioDynaMo: a general platform for scalable agent-based simulation"

Breitwieser, Lukas
Hesam, Ahmad
de Montigny, Jean
Vavourakis, Vasileios
Iosif, Alexandros
Jennings, Jack
Kaiser, Marcus
Manca, Marco
Di Meglio, Alberto
Al-Ars, Zaid
Rademakers, Fons
Mutlu, Onur
Bauer, Roman

May 2020

This repository contains all supporting material for the paper "BioDynaMo: a general platform for sc...

Supporting information for "BioDynaMo: a modular platform for high-performance agent-based simulation"

Breitwieser, Lukas
Hesam, Ahmad
de Montigny, Jean
Vavourakis, Vasileios
Iosif, Alexandros
Jennings, Jack
Kaiser, Marcus
Manca, Marco
Di Meglio, Alberto
Al-Ars, Zaid
Rademakers, Fons
Mutlu, Onur
Bauer, Roman

May 2020

This repository contains all supporting material for the paper "BioDynaMo: a modular platform for hi...

Supplementary Materials for "High-Performance and Scalable Agent-Based Simulation with BioDynaMo"

Lukas Breitwieser
Ahmad Hesam
Fons Rademakers
Juan Gómez Luna
Onur Mutlu

January 2023

This repository contains all Supplementary Materials for the paper "High-Performance and Scalable Ag...

BioDynaMo Notebook Service

Berina Bandić

October 2020

The BioDynaMo project is a general platform for agent-based computer simulations of biological tissu...

The BioDynaMo project: Creating a platform for large-scale reproducible biological simulations

Breitwieser L.
Bauer R.
Di Meglio A.
Johard L.
Kaiser M.
Manca M.
Mazzara M.
Rademakers F.
Talanov M.

January 2016

BioDynaMo: A modular platform for high-performance agent-based simulation

Breitwieser, Lukas (author)
Hesam, A.S. (author)
De Montigny, Jean (author)
Vavourakis, Vasileios (author)
Iosif, Alexandros (author)
Jennings, Jack (author)
Kaiser, Marcus (author)
Manca, Marco (author)
Di Meglio, Alberto (author)
Al-Ars, Z. (author)
Rademakers, Fons (author)
Mutlu, Onur (author)
Bauer, Roman (author)

January 2022

Motivation: Agent-based modeling is an indispensable tool for studying complex biological systems. H...

BioDynaMo: a modular platform for high-performance agent-based simulation

Breitwieser, Lukas
Hesam, Ahmad
de Montigny, Jean
Vavourakis, Vasileios
Iosif, Alexandros
Jennings, Jack
Kaiser, Marcus
Manca, Marco
Di Meglio, Alberto
Al-Ars, Zaid
Rademakers, Fons
Mutlu, Onur
Bauer, Roman

January 2022

Motivation Agent-based modeling is an indispensable tool for studying complex biological systems. H...

BioDynaMo Lab

Muhammad Hassan Ahmed

November 2021

BioDynaMo is an open-source, high-performance, and modular agent-based simulation platform. The main...

The BioDynaMo project: Experience report

Bauer R.
Breitwieser L.
Di Meglio A.
Johard L.
Kaiser M.
Manca M.
Mazzara M.
Rademakers F.
Talanov M.
Tchitchigin A.

March 2020

How to build a large-scale agent-based simulator

Breitwieser, Lukas

January 2019

Abstract CERN openlab's knowledge transfer initiative aims at accelerating research outside high-en...

BioSimGrid: a distributed database for biomolecular simulations

Bing Wu
Kaihsu Tai
Stuart Murdock
Muan Hong Ng
Steve Johnston
Hans Fangohr
Paul Jeffreys
Simon Cox
Jonathan Essex
Mark S. P. Sansom

January 2003

Biomolecular simulations provide data on the conformational dynamics and energetics of complex biomo...

An Agent-based Multilayer Architecture for Bioinformatics Grids.

BARTOCCI E
CACCIAGRANO, Diletta Romana
CANNATA, Nicola
CORRADINI, Flavio
MERELLI, Emanuela
MILANESI L
ROMANO P.

January 2007

Due to the huge volume and complexity of biological data available today, a fundamental component of...

Agents in bioinformatics, computational and systems biology

MERELLI, Emanuela
ARMANO G
CANNATA, Nicola
CORRADINI, Flavio
D'INVERNO M
DOMS A
LORD P
MARTIN A
MILANESI L
MOLLER S
SCHROEDER M
LUCK M.

January 2007

The adoption of agent technologies and multi-agent systems constitutes an emerging area in bioinform...

Supporting information for "High-Performance Agent-Based Simulation"

Anonymous

April 2022

This repository contains all supporting material for the paper "High-Performance Agent-Based Simulat...

BioSimGrid: towards a worldwide repository for biomolecular simulations

Tai, Kaihsu
Murdock, Stuart
Wu, Bing
Ng, Muan Hong
Johnston, Steven
Fangohr, Hans
Cox, Simon J.
Jeffreys, Paul
Essex, Jonathan W.
Sansom, Mark S. P.

January 2004

BioSimGrid is a database for biomolecular simulations, or, a `Protein Data Bank extended in time' fo...

Supporting information for "BioDynaMo: a general platform for scalable agent-based simulation"

Breitwieser, Lukas
Hesam, Ahmad
de Montigny, Jean
Vavourakis, Vasileios
Iosif, Alexandros
Jennings, Jack
Kaiser, Marcus
Manca, Marco
Di Meglio, Alberto
Al-Ars, Zaid
Rademakers, Fons
Mutlu, Onur
Bauer, Roman

May 2020

This repository contains all supporting material for the paper "BioDynaMo: a general platform for sc...

Supporting information for "BioDynaMo: a modular platform for high-performance agent-based simulation"

Breitwieser, Lukas
Hesam, Ahmad
de Montigny, Jean
Vavourakis, Vasileios
Iosif, Alexandros
Jennings, Jack
Kaiser, Marcus
Manca, Marco
Di Meglio, Alberto
Al-Ars, Zaid
Rademakers, Fons
Mutlu, Onur
Bauer, Roman

May 2020

This repository contains all supporting material for the paper "BioDynaMo: a modular platform for hi...

Supplementary Materials for "High-Performance and Scalable Agent-Based Simulation with BioDynaMo"

Lukas Breitwieser
Ahmad Hesam
Fons Rademakers
Juan Gómez Luna
Onur Mutlu

January 2023

This repository contains all Supplementary Materials for the paper "High-Performance and Scalable Ag...

BioDynaMo Notebook Service

Berina Bandić

October 2020

The BioDynaMo project is a general platform for agent-based computer simulations of biological tissu...

The BioDynaMo project: Creating a platform for large-scale reproducible biological simulations

Breitwieser L.
Bauer R.
Di Meglio A.
Johard L.
Kaiser M.
Manca M.
Mazzara M.
Rademakers F.
Talanov M.

January 2016

BioDynaMo: A modular platform for high-performance agent-based simulation

Breitwieser, Lukas (author)
Hesam, A.S. (author)
De Montigny, Jean (author)
Vavourakis, Vasileios (author)
Iosif, Alexandros (author)
Jennings, Jack (author)
Kaiser, Marcus (author)
Manca, Marco (author)
Di Meglio, Alberto (author)
Al-Ars, Z. (author)
Rademakers, Fons (author)
Mutlu, Onur (author)
Bauer, Roman (author)

January 2022

Motivation: Agent-based modeling is an indispensable tool for studying complex biological systems. H...

BioDynaMo: a modular platform for high-performance agent-based simulation

Breitwieser, Lukas
Hesam, Ahmad
de Montigny, Jean
Vavourakis, Vasileios
Iosif, Alexandros
Jennings, Jack
Kaiser, Marcus
Manca, Marco
Di Meglio, Alberto
Al-Ars, Zaid
Rademakers, Fons
Mutlu, Onur
Bauer, Roman

January 2022

Motivation Agent-based modeling is an indispensable tool for studying complex biological systems. H...

BioDynaMo Lab

Muhammad Hassan Ahmed

November 2021

BioDynaMo is an open-source, high-performance, and modular agent-based simulation platform. The main...

The BioDynaMo project: Experience report

Bauer R.
Breitwieser L.
Di Meglio A.
Johard L.
Kaiser M.
Manca M.
Mazzara M.
Rademakers F.
Talanov M.
Tchitchigin A.

March 2020

How to build a large-scale agent-based simulator

Breitwieser, Lukas

January 2019

Abstract CERN openlab's knowledge transfer initiative aims at accelerating research outside high-en...

BioSimGrid: a distributed database for biomolecular simulations

Bing Wu
Kaihsu Tai
Stuart Murdock
Muan Hong Ng
Steve Johnston
Hans Fangohr
Paul Jeffreys
Simon Cox
Jonathan Essex
Mark S. P. Sansom

January 2003

Biomolecular simulations provide data on the conformational dynamics and energetics of complex biomo...

An Agent-based Multilayer Architecture for Bioinformatics Grids.

BARTOCCI E
CACCIAGRANO, Diletta Romana
CANNATA, Nicola
CORRADINI, Flavio
MERELLI, Emanuela
MILANESI L
ROMANO P.

January 2007

Due to the huge volume and complexity of biological data available today, a fundamental component of...

Agents in bioinformatics, computational and systems biology

MERELLI, Emanuela
ARMANO G
CANNATA, Nicola
CORRADINI, Flavio
D'INVERNO M
DOMS A
LORD P
MARTIN A
MILANESI L
MOLLER S
SCHROEDER M
LUCK M.

January 2007

The adoption of agent technologies and multi-agent systems constitutes an emerging area in bioinform...

Supporting information for "High-Performance Agent-Based Simulation"

Anonymous

April 2022

This repository contains all supporting material for the paper "High-Performance Agent-Based Simulat...

BioSimGrid: towards a worldwide repository for biomolecular simulations

Tai, Kaihsu
Murdock, Stuart
Wu, Bing
Ng, Muan Hong
Johnston, Steven
Fangohr, Hans
Cox, Simon J.
Jeffreys, Paul
Essex, Jonathan W.
Sansom, Mark S. P.

January 2004

BioSimGrid is a database for biomolecular simulations, or, a `Protein Data Bank extended in time' fo...

Supporting information for "BioDynaMo: an agent-based simulation platform for scalable computational biology research"

Abstract

Extracted data

Supporting information for "BioDynaMo: an agent-based simulation platform for scalable computational biology research"

Abstract

Extracted data

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